Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm11918-201ENSMUST00000121660 179 ntBASIC18.42■□□□□ 0.54
Trim28Q62318 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC18.42■□□□□ 0.54
Trim28Q62318 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC18.42■□□□□ 0.54
Trim28Q62318 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
Trim28Q62318 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
Trim28Q62318 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Trim28Q62318 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trim28Q62318 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trim28Q62318 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC18.41■□□□□ 0.54
Trim28Q62318 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
Trim28Q62318 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC18.41■□□□□ 0.54
Trim28Q62318 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Gm18307-201ENSMUST00000206864 949 ntBASIC18.41■□□□□ 0.54
Trim28Q62318 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Trim28Q62318 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC18.41■□□□□ 0.54
Trim28Q62318 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim28Q62318 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Trim28Q62318 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Gm3809-201ENSMUST00000180973 1006 ntBASIC18.4■□□□□ 0.54
Trim28Q62318 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC18.4■□□□□ 0.54
Trim28Q62318 Gm2495-201ENSMUST00000191160 466 ntBASIC18.4■□□□□ 0.54
Trim28Q62318 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC18.4■□□□□ 0.54
Trim28Q62318 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC18.4■□□□□ 0.54
Trim28Q62318 AC132467.2-202ENSMUST00000227726 559 ntBASIC18.4■□□□□ 0.54
Trim28Q62318 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim28Q62318 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC18.4■□□□□ 0.54
Trim28Q62318 Gm5912-201ENSMUST00000122282 1438 ntBASIC18.4■□□□□ 0.54
Trim28Q62318 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trim28Q62318 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trim28Q62318 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Trim28Q62318 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Trim28Q62318 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
Trim28Q62318 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Mir698-201ENSMUST00000102164 109 ntBASIC18.39■□□□□ 0.53
Trim28Q62318 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Trim28Q62318 Gm7446-201ENSMUST00000221035 1240 ntBASIC18.39■□□□□ 0.53
Trim28Q62318 AC166997.1-201ENSMUST00000225122 572 ntBASIC18.39■□□□□ 0.53
Trim28Q62318 AC192088.1-201ENSMUST00000227561 301 ntBASIC18.39■□□□□ 0.53
Trim28Q62318 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trim28Q62318 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trim28Q62318 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Gm13859-201ENSMUST00000119936 1423 ntBASIC18.39■□□□□ 0.53
Trim28Q62318 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim28Q62318 Gm37015-201ENSMUST00000192763 1521 ntBASIC18.39■□□□□ 0.53
Trim28Q62318 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
Trim28Q62318 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trim28Q62318 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trim28Q62318 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Gm12960-201ENSMUST00000120017 1066 ntBASIC18.38■□□□□ 0.53
Trim28Q62318 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC18.38■□□□□ 0.53
Trim28Q62318 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Trim28Q62318 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms