Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm27430-201ENSMUST00000184585 107 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Gm44333-201ENSMUST00000197168 107 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 AC124732.2-201ENSMUST00000221977 316 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3bQ3ULL6 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Gm13616-201ENSMUST00000120600 222 ntBASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Gm9719-201ENSMUST00000162765 543 ntBASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 AC102291.3-201ENSMUST00000226566 405 ntBASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Upf3bQ3ULL6 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Gm8410-201ENSMUST00000117225 605 ntBASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms