Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Gm24158-201ENSMUST00000175263 71 ntBASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Gm7774-201ENSMUST00000200064 533 ntBASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chmp6P0C0A3 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Gm9182-201ENSMUST00000217829 639 ntBASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
Chmp6P0C0A3 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chmp6P0C0A3 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms