Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Gm9856-201ENSMUST00000217077 2578 ntBASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Vps53Q8CCB4 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Gm37277-201ENSMUST00000194052 1111 ntBASIC16.65■□□□□ 0.26
Vps53Q8CCB4 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps53Q8CCB4 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
Vps53Q8CCB4 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm8749-201ENSMUST00000117737 331 ntBASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm6415-201ENSMUST00000118488 348 ntBASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm2810-201ENSMUST00000118681 990 ntBASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm27618-201ENSMUST00000183671 60 ntBASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm27306-201ENSMUST00000183970 107 ntBASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps53Q8CCB4 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm45779-201ENSMUST00000212189 4064 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm44645-201ENSMUST00000205492 1653 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm13223-201ENSMUST00000118609 747 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm12151-201ENSMUST00000121374 290 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm9824-201ENSMUST00000178707 561 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Mir8102-201ENSMUST00000184148 139 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm17837-201ENSMUST00000186435 985 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gm38225-201ENSMUST00000194001 393 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps53Q8CCB4 AC131743.5-201ENSMUST00000220775 1618 ntBASIC16.63■□□□□ 0.25
Vps53Q8CCB4 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms