Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.3■□□□□ 0.2
Ccdc88aQ5SNZ0 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 AC154527.2-201ENSMUST00000225256 1466 ntBASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm23931-201ENSMUST00000103842 109 ntBASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Trav4d-2-201ENSMUST00000120914 335 ntBASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 AC159747.1-201ENSMUST00000219903 265 ntBASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm9728-201ENSMUST00000200197 1055 ntBASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc88aQ5SNZ0 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm6244-201ENSMUST00000178732 841 ntBASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm27731-201ENSMUST00000185192 107 ntBASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Ighv8-14-201ENSMUST00000196781 358 ntBASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 CT485787.1-201ENSMUST00000225617 968 ntBASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Olfr582-201ENSMUST00000098212 960 ntBASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc88aQ5SNZ0 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm15393-201ENSMUST00000120499 219 ntBASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 AC159896.2-201ENSMUST00000214753 269 ntBASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 AC154319.1-201ENSMUST00000216330 312 ntBASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Gm18027-201ENSMUST00000218947 619 ntBASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 AL589735.1-201ENSMUST00000224353 270 ntBASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.27■□□□□ 0.2
Ccdc88aQ5SNZ0 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC16.27■□□□□ 0.19
Ccdc88aQ5SNZ0 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms