Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Trim63Q38HM4 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC11.79□□□□□ -0.52
Trim63Q38HM4 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Gm4968-201ENSMUST00000071458 858 ntBASIC11.79□□□□□ -0.52
Trim63Q38HM4 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC11.79□□□□□ -0.52
Trim63Q38HM4 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Trim63Q38HM4 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Gm43859-201ENSMUST00000200075 1412 ntBASIC11.78□□□□□ -0.52
Trim63Q38HM4 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Gm37292-201ENSMUST00000192062 758 ntBASIC11.78□□□□□ -0.52
Trim63Q38HM4 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Trim63Q38HM4 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim63Q38HM4 AC126250.1-201ENSMUST00000228343 1768 ntBASIC11.77□□□□□ -0.52
Trim63Q38HM4 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trim63Q38HM4 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Gm26524-201ENSMUST00000192339 390 ntBASIC11.77□□□□□ -0.53
Trim63Q38HM4 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trim63Q38HM4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms