Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm15393-201ENSMUST00000120499 219 ntBASIC12.35□□□□□ -0.43
Nkx3-1P97436 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.35□□□□□ -0.43
Nkx3-1P97436 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.35□□□□□ -0.43
Nkx3-1P97436 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Nkx3-1P97436 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Gm10275-202ENSMUST00000168697 495 ntBASIC12.34□□□□□ -0.43
Nkx3-1P97436 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.34□□□□□ -0.43
Nkx3-1P97436 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.34□□□□□ -0.43
Nkx3-1P97436 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.34□□□□□ -0.43
Nkx3-1P97436 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Gm10275-201ENSMUST00000092620 635 ntBASIC12.34□□□□□ -0.43
Nkx3-1P97436 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.34□□□□□ -0.43
Nkx3-1P97436 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Nkx3-1P97436 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Nkx3-1P97436 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.33□□□□□ -0.43
Nkx3-1P97436 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Nkx3-1P97436 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC12.33□□□□□ -0.43
Nkx3-1P97436 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Gm15460-201ENSMUST00000118147 391 ntBASIC12.33□□□□□ -0.44
Nkx3-1P97436 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Mir6392-201ENSMUST00000184924 108 ntBASIC12.33□□□□□ -0.44
Nkx3-1P97436 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.33□□□□□ -0.44
Nkx3-1P97436 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms