Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Tnfsf4P43488 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.82□□□□□ -0.2
Tnfsf4P43488 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC13.82□□□□□ -0.2
Tnfsf4P43488 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 AC154222.1-201ENSMUST00000223882 475 ntBASIC13.82□□□□□ -0.2
Tnfsf4P43488 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Gm37691-201ENSMUST00000192147 2573 ntBASIC13.82□□□□□ -0.2
Tnfsf4P43488 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Tnfsf4P43488 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.81□□□□□ -0.2
Tnfsf4P43488 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Gm9385-201ENSMUST00000117563 472 ntBASIC13.81□□□□□ -0.2
Tnfsf4P43488 Gm2651-201ENSMUST00000203560 838 ntBASIC13.81□□□□□ -0.2
Tnfsf4P43488 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 AC138767.1-201ENSMUST00000222661 415 ntBASIC13.81□□□□□ -0.2
Tnfsf4P43488 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.81□□□□□ -0.2
Tnfsf4P43488 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.81□□□□□ -0.2
Tnfsf4P43488 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Tnfsf4P43488 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Tnfsf4P43488 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms