Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Sdc1P18828 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Sdc1P18828 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC11.72□□□□□ -0.53
Sdc1P18828 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC11.72□□□□□ -0.53
Sdc1P18828 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC11.72□□□□□ -0.53
Sdc1P18828 AC159205.6-201ENSMUST00000224935 887 ntBASIC11.72□□□□□ -0.53
Sdc1P18828 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC11.72□□□□□ -0.53
Sdc1P18828 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Sdc1P18828 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sdc1P18828 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.53
Sdc1P18828 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Sdc1P18828 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Gm45638-201ENSMUST00000211507 2878 ntBASIC11.71□□□□□ -0.53
Sdc1P18828 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC11.71□□□□□ -0.53
Sdc1P18828 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Mir770-201ENSMUST00000103252 94 ntBASIC11.71□□□□□ -0.53
Sdc1P18828 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC11.71□□□□□ -0.53
Sdc1P18828 Gm14042-201ENSMUST00000120139 833 ntBASIC11.71□□□□□ -0.53
Sdc1P18828 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC11.71□□□□□ -0.53
Sdc1P18828 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC11.71□□□□□ -0.53
Sdc1P18828 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC11.71□□□□□ -0.53
Sdc1P18828 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Sdc1P18828 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sdc1P18828 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
Sdc1P18828 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sdc1P18828 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC11.7□□□□□ -0.54
Sdc1P18828 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC11.7□□□□□ -0.54
Sdc1P18828 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Sdc1P18828 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Sdc1P18828 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Sdc1P18828 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Sdc1P18828 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Sdc1P18828 Gm9726-201ENSMUST00000180321 678 ntBASIC11.7□□□□□ -0.54
Sdc1P18828 Gm44414-201ENSMUST00000203660 2109 ntBASIC11.7□□□□□ -0.54
Sdc1P18828 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC11.7□□□□□ -0.54
Sdc1P18828 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC11.7□□□□□ -0.54
Sdc1P18828 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Sdc1P18828 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC11.7□□□□□ -0.54
Sdc1P18828 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC11.7□□□□□ -0.54
Sdc1P18828 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Sdc1P18828 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC11.7□□□□□ -0.54
Sdc1P18828 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms