Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Col3a1P08121 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Col3a1P08121 Gm37411-201ENSMUST00000194180 2282 ntBASIC16.88■□□□□ 0.29
Col3a1P08121 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Col3a1P08121 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Col3a1P08121 Gm15824-201ENSMUST00000119516 955 ntBASIC16.88■□□□□ 0.29
Col3a1P08121 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Gm6007-201ENSMUST00000208170 823 ntBASIC16.88■□□□□ 0.29
Col3a1P08121 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Gm5356-201ENSMUST00000093326 615 ntBASIC16.88■□□□□ 0.29
Col3a1P08121 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col3a1P08121 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Col3a1P08121 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
Col3a1P08121 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC16.87■□□□□ 0.29
Col3a1P08121 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Col3a1P08121 Gm8584-201ENSMUST00000171982 758 ntBASIC16.87■□□□□ 0.29
Col3a1P08121 Gm7067-201ENSMUST00000207698 1249 ntBASIC16.87■□□□□ 0.29
Col3a1P08121 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col3a1P08121 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Col3a1P08121 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
Col3a1P08121 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Col3a1P08121 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.87■□□□□ 0.29
Col3a1P08121 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Col3a1P08121 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Col3a1P08121 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm6244-201ENSMUST00000178732 841 ntBASIC16.86■□□□□ 0.29
Col3a1P08121 AY702102-202ENSMUST00000194651 1173 ntBASIC16.86■□□□□ 0.29
Col3a1P08121 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Col3a1P08121 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Col3a1P08121 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Col3a1P08121 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Col3a1P08121 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Gm2445-201ENSMUST00000182798 989 ntBASIC16.86■□□□□ 0.29
Col3a1P08121 Gm27892-201ENSMUST00000185017 106 ntBASIC16.86■□□□□ 0.29
Col3a1P08121 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Col3a1P08121 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Gm13689-201ENSMUST00000119360 685 ntBASIC16.85■□□□□ 0.29
Col3a1P08121 Gm12485-201ENSMUST00000119641 291 ntBASIC16.85■□□□□ 0.29
Col3a1P08121 Gm15429-201ENSMUST00000151268 798 ntBASIC16.85■□□□□ 0.29
Col3a1P08121 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC16.85■□□□□ 0.29
Col3a1P08121 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC16.85■□□□□ 0.29
Col3a1P08121 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col3a1P08121 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.85■□□□□ 0.29
Col3a1P08121 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms