Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Smc1aQ9CU62 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Pcgf5-211ENSMUST00000225920 6443 ntBASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Gm10154-201ENSMUST00000084445 354 ntBASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Smc1aQ9CU62 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm22065-201ENSMUST00000103753 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm22066-201ENSMUST00000103761 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24932-201ENSMUST00000103763 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24115-201ENSMUST00000103799 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm22190-201ENSMUST00000103827 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm22191-201ENSMUST00000103831 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24721-201ENSMUST00000103849 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm28018-201ENSMUST00000103869 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm26399-201ENSMUST00000103937 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24158-201ENSMUST00000175263 71 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm25349-201ENSMUST00000177728 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm23616-201ENSMUST00000177797 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm25871-201ENSMUST00000177816 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24752-201ENSMUST00000178240 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24496-201ENSMUST00000178287 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm25649-201ENSMUST00000178476 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm25548-201ENSMUST00000178681 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm23147-201ENSMUST00000178841 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm26095-201ENSMUST00000179270 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm22171-201ENSMUST00000179283 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm23936-201ENSMUST00000179354 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm22619-201ENSMUST00000179516 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm25255-201ENSMUST00000179579 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24755-201ENSMUST00000179691 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm26506-201ENSMUST00000179692 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm25086-201ENSMUST00000179931 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm23243-201ENSMUST00000180047 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24659-201ENSMUST00000180212 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm24169-201ENSMUST00000180244 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm23689-201ENSMUST00000180354 110 ntBASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Smc1aQ9CU62 Gm27359-201ENSMUST00000184153 110 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms