Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm42693-201ENSMUST00000196779 631 ntBASIC15.04■□□□□ -0
Clp1Q99LI9 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Gm10478-201ENSMUST00000084451 396 ntBASIC15.04■□□□□ -0
Clp1Q99LI9 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Clp1Q99LI9 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Clp1Q99LI9 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Clp1Q99LI9 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Clp1Q99LI9 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Clp1Q99LI9 Zscan30-202ENSMUST00000224144 1458 ntBASIC15.03■□□□□ -0
Clp1Q99LI9 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC15.03■□□□□ -0
Clp1Q99LI9 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.03■□□□□ -0
Clp1Q99LI9 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.03■□□□□ -0
Clp1Q99LI9 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC15.03■□□□□ -0
Clp1Q99LI9 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC15.03■□□□□ -0
Clp1Q99LI9 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Clp1Q99LI9 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Gm8775-201ENSMUST00000170943 1327 ntBASIC15.02■□□□□ -0
Clp1Q99LI9 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.02■□□□□ -0
Clp1Q99LI9 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Gm9728-201ENSMUST00000200197 1055 ntBASIC15.02■□□□□ -0
Clp1Q99LI9 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC15.02■□□□□ -0
Clp1Q99LI9 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Clp1Q99LI9 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Clp1Q99LI9 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Clp1Q99LI9 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 BC037039-201ENSMUST00000192003 2205 ntBASIC15.01□□□□□ -0.01
Clp1Q99LI9 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC15.01□□□□□ -0.01
Clp1Q99LI9 Gm26464-201ENSMUST00000157094 305 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms