Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ccdc9Q8VC31 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Ccdc9Q8VC31 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ccdc9Q8VC31 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Gm37795-201ENSMUST00000194216 2459 ntBASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc9Q8VC31 Gm7899-201ENSMUST00000192935 1897 ntBASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc9Q8VC31 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Gm37722-201ENSMUST00000193757 208 ntBASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC17.23■□□□□ 0.35
Ccdc9Q8VC31 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms