Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gm11860-201ENSMUST00000122346 1010 ntBASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 CT009713.7-201ENSMUST00000224689 571 ntBASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Trav3-3Q5R1C3 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Ssr1-203ENSMUST00000225246 1825 ntBASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trav3-3Q5R1C3 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Ighv6-1-201ENSMUST00000193612 343 ntBASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC10.77□□□□□ -0.69
Trav3-3Q5R1C3 AC125108.1-201ENSMUST00000218986 2330 ntBASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Gm25016-201ENSMUST00000158399 131 ntBASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Gm45328-201ENSMUST00000210942 917 ntBASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC10.76□□□□□ -0.69
Trav3-3Q5R1C3 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms