Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm37751-201ENSMUST00000192440 1198 ntBASIC14.02□□□□□ -0.17
Col9a1Q05722 4930598N05Rik-205ENSMUST00000208693 873 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Gm29705-201ENSMUST00000212598 474 ntBASIC14.02□□□□□ -0.17
Col9a1Q05722 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Col9a1Q05722 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col9a1Q05722 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Gm13183-201ENSMUST00000118615 789 ntBASIC14.01□□□□□ -0.17
Col9a1Q05722 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Gm38217-201ENSMUST00000194358 910 ntBASIC14.01□□□□□ -0.17
Col9a1Q05722 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC14.01□□□□□ -0.17
Col9a1Q05722 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC14.01□□□□□ -0.17
Col9a1Q05722 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col9a1Q05722 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC14□□□□□ -0.17
Col9a1Q05722 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Prl8a2-202ENSMUST00000110363 922 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 BC117090-201ENSMUST00000114850 387 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC14□□□□□ -0.17
Col9a1Q05722 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 Gm27682-201ENSMUST00000183930 110 ntBASIC14□□□□□ -0.17
Col9a1Q05722 Prl8a2-201ENSMUST00000018403 939 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC14□□□□□ -0.17
Col9a1Q05722 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14□□□□□ -0.17
Col9a1Q05722 Gm4607-201ENSMUST00000206649 577 ntBASIC14□□□□□ -0.17
Col9a1Q05722 Olfr967-202ENSMUST00000213358 1210 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC14□□□□□ -0.17
Col9a1Q05722 AC192088.1-201ENSMUST00000227561 301 ntBASIC14□□□□□ -0.17
Col9a1Q05722 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14□□□□□ -0.17
Col9a1Q05722 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col9a1Q05722 Tfpi2-201ENSMUST00000031674 1530 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col9a1Q05722 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col9a1Q05722 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col9a1Q05722 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col9a1Q05722 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col9a1Q05722 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col9a1Q05722 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Zfp966-202ENSMUST00000109018 733 ntTSL 3 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Zfp968-202ENSMUST00000109048 733 ntTSL 3 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm16133-202ENSMUST00000160278 565 ntTSL 3 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Col9a1Q05722 1700065O20Rik-201ENSMUST00000186872 710 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm3476-203ENSMUST00000190582 612 ntTSL 5 BASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.99□□□□□ -0.17
Col9a1Q05722 Gm18944-201ENSMUST00000207672 643 ntBASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms