Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.16■□□□□ 0.02
Shmt1P50431 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Shmt1P50431 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.15■□□□□ 0.02
Shmt1P50431 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC15.15■□□□□ 0.02
Shmt1P50431 Gm12882-201ENSMUST00000121696 517 ntBASIC15.15■□□□□ 0.02
Shmt1P50431 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Shmt1P50431 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 AA619741-201ENSMUST00000195095 646 ntBASIC15.15■□□□□ 0.02
Shmt1P50431 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Shmt1P50431 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Shmt1P50431 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.15■□□□□ 0.02
Shmt1P50431 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Shmt1P50431 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.15■□□□□ 0.02
Shmt1P50431 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Shmt1P50431 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.14■□□□□ 0.01
Shmt1P50431 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Shmt1P50431 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.14■□□□□ 0.01
Shmt1P50431 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Shmt1P50431 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Shmt1P50431 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC15.14■□□□□ 0.01
Shmt1P50431 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.14■□□□□ 0.01
Shmt1P50431 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.14■□□□□ 0.01
Shmt1P50431 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Shmt1P50431 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 AC125206.2-201ENSMUST00000217454 574 ntBASIC15.14■□□□□ 0.01
Shmt1P50431 AC102291.3-201ENSMUST00000226566 405 ntBASIC15.14■□□□□ 0.01
Shmt1P50431 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Shmt1P50431 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Shmt1P50431 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Shmt1P50431 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Shmt1P50431 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Shmt1P50431 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC15.13■□□□□ 0.01
Shmt1P50431 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Shmt1P50431 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Shmt1P50431 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.13■□□□□ 0.01
Shmt1P50431 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms