Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx1P48377 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx1P48377 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC17.15■□□□□ 0.34
Rfx1P48377 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Rfx1P48377 Gm7230-201ENSMUST00000173026 815 ntBASIC17.15■□□□□ 0.34
Rfx1P48377 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Rfx1P48377 Gm27459-201ENSMUST00000184860 107 ntBASIC17.15■□□□□ 0.34
Rfx1P48377 Olfr286-202ENSMUST00000205305 969 ntBASIC17.15■□□□□ 0.34
Rfx1P48377 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.15■□□□□ 0.34
Rfx1P48377 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Rfx1P48377 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC17.15■□□□□ 0.34
Rfx1P48377 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.15■□□□□ 0.34
Rfx1P48377 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Il17rd-203ENSMUST00000225146 3366 ntBASIC17.15■□□□□ 0.34
Rfx1P48377 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rfx1P48377 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Rfx1P48377 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Rfx1P48377 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Rfx1P48377 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC17.14■□□□□ 0.33
Rfx1P48377 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.14■□□□□ 0.33
Rfx1P48377 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC17.14■□□□□ 0.33
Rfx1P48377 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.14■□□□□ 0.33
Rfx1P48377 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC17.14■□□□□ 0.33
Rfx1P48377 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.14■□□□□ 0.33
Rfx1P48377 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Gm43364-201ENSMUST00000196046 3274 ntBASIC17.14■□□□□ 0.33
Rfx1P48377 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Rfx1P48377 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rfx1P48377 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Rfx1P48377 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Rfx1P48377 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.13■□□□□ 0.33
Rfx1P48377 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Gm5366-201ENSMUST00000215494 1338 ntBASIC17.13■□□□□ 0.33
Rfx1P48377 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Gm42769-201ENSMUST00000198576 1659 ntBASIC17.13■□□□□ 0.33
Rfx1P48377 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
Rfx1P48377 Grk6-205ENSMUST00000224653 2976 ntBASIC17.13■□□□□ 0.33
Rfx1P48377 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rfx1P48377 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Rfx1P48377 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.12■□□□□ 0.33
Rfx1P48377 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Rfx1P48377 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rfx1P48377 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Gm42872-201ENSMUST00000200026 1967 ntBASIC17.11■□□□□ 0.33
Rfx1P48377 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms