Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC11.61□□□□□ -0.55
Cdx1P18111 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC11.61□□□□□ -0.55
Cdx1P18111 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
Cdx1P18111 Gm12497-201ENSMUST00000138778 237 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Gm25925-201ENSMUST00000158314 306 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Gm7507-201ENSMUST00000183053 1008 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC11.61□□□□□ -0.55
Cdx1P18111 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Gm5364-201ENSMUST00000216789 889 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC11.61□□□□□ -0.55
Cdx1P18111 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Cdx1P18111 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 AC154527.4-201ENSMUST00000224364 1667 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Carlr-201ENSMUST00000181515 2574 ntBASIC11.61□□□□□ -0.55
Cdx1P18111 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC11.6□□□□□ -0.55
Cdx1P18111 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Gm9889-202ENSMUST00000206983 1577 ntBASIC11.6□□□□□ -0.55
Cdx1P18111 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Cdx1P18111 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC11.6□□□□□ -0.55
Cdx1P18111 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC11.6□□□□□ -0.55
Cdx1P18111 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 AC154757.1-201ENSMUST00000228289 336 ntBASIC11.6□□□□□ -0.55
Cdx1P18111 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Cdx1P18111 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Cdx1P18111 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Cdx1P18111 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm38355-201ENSMUST00000192514 1570 ntBASIC11.59□□□□□ -0.55
Cdx1P18111 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Cdx1P18111 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Cdx1P18111 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm13418-201ENSMUST00000119097 944 ntBASIC11.59□□□□□ -0.55
Cdx1P18111 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC11.59□□□□□ -0.55
Cdx1P18111 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC11.59□□□□□ -0.55
Cdx1P18111 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms