Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Gm12490-201ENSMUST00000120255 560 ntBASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Gm14042-201ENSMUST00000120139 833 ntBASIC15.53■□□□□ 0.08
Trim54Q9ERP3 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 AA619741-201ENSMUST00000195095 646 ntBASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Gm6916-202ENSMUST00000205523 195 ntBASIC15.53■□□□□ 0.08
Trim54Q9ERP3 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim54Q9ERP3 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Gm22189-201ENSMUST00000103822 86 ntBASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim54Q9ERP3 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim54Q9ERP3 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim54Q9ERP3 BC001981-202ENSMUST00000191393 1545 ntBASIC15.52■□□□□ 0.07
Trim54Q9ERP3 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim54Q9ERP3 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim54Q9ERP3 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim54Q9ERP3 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim54Q9ERP3 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim54Q9ERP3 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim54Q9ERP3 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms