Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Gm2213-201ENSMUST00000197485 688 ntBASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx56Q9D0R4 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Gm14822-201ENSMUST00000122247 291 ntBASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Mir6990-201ENSMUST00000183724 91 ntBASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx56Q9D0R4 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx56Q9D0R4 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx56Q9D0R4 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
Ddx56Q9D0R4 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx56Q9D0R4 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.08■□□□□ 0.01
Ddx56Q9D0R4 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx56Q9D0R4 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC15.08■□□□□ 0
Ddx56Q9D0R4 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms