Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Nr1h4Q60641 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Gm15173-201ENSMUST00000122049 433 ntBASIC13.7□□□□□ -0.22
Nr1h4Q60641 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Gm4899-201ENSMUST00000178708 719 ntBASIC13.7□□□□□ -0.22
Nr1h4Q60641 Gm28033-201ENSMUST00000184224 96 ntBASIC13.7□□□□□ -0.22
Nr1h4Q60641 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Nr1h4Q60641 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC13.69□□□□□ -0.22
Nr1h4Q60641 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Olfr286-202ENSMUST00000205305 969 ntBASIC13.69□□□□□ -0.22
Nr1h4Q60641 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC13.69□□□□□ -0.22
Nr1h4Q60641 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Nr1h4Q60641 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.68□□□□□ -0.22
Nr1h4Q60641 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm2272-201ENSMUST00000194903 582 ntBASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm2451-201ENSMUST00000199447 999 ntBASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm10290-201ENSMUST00000200451 999 ntBASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Gm34391-201ENSMUST00000203706 907 ntBASIC13.68□□□□□ -0.22
Nr1h4Q60641 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Nr1h4Q60641 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms