Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col18a1P39061 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col18a1P39061 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col18a1P39061 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC18.66■□□□□ 0.58
Col18a1P39061 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC18.66■□□□□ 0.58
Col18a1P39061 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Col18a1P39061 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC18.66■□□□□ 0.58
Col18a1P39061 Gm12715-201ENSMUST00000121430 1128 ntBASIC18.66■□□□□ 0.58
Col18a1P39061 Gm16479-201ENSMUST00000121706 932 ntBASIC18.66■□□□□ 0.58
Col18a1P39061 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC18.66■□□□□ 0.58
Col18a1P39061 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC18.66■□□□□ 0.58
Col18a1P39061 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Col18a1P39061 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Col18a1P39061 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col18a1P39061 Mir698-201ENSMUST00000102164 109 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 Gm14028-201ENSMUST00000117434 479 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC18.65■□□□□ 0.58
Col18a1P39061 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC18.65■□□□□ 0.58
Col18a1P39061 AC154595.3-201ENSMUST00000224579 384 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 Morn2-202ENSMUST00000227729 656 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 AC022775.2-201ENSMUST00000227885 646 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC18.65■□□□□ 0.58
Col18a1P39061 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC18.65■□□□□ 0.58
Col18a1P39061 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col18a1P39061 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC18.65■□□□□ 0.58
Col18a1P39061 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Col18a1P39061 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC18.65■□□□□ 0.58
Col18a1P39061 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Col18a1P39061 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
Col18a1P39061 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.65■□□□□ 0.58
Col18a1P39061 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col18a1P39061 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Col18a1P39061 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Col18a1P39061 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Col18a1P39061 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
Col18a1P39061 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Col18a1P39061 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Gm13886-201ENSMUST00000117876 1183 ntBASIC18.64■□□□□ 0.57
Col18a1P39061 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC18.64■□□□□ 0.57
Col18a1P39061 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Col18a1P39061 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Gm18244-201ENSMUST00000219747 1566 ntBASIC18.64■□□□□ 0.57
Col18a1P39061 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.64■□□□□ 0.57
Col18a1P39061 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Gm43352-201ENSMUST00000196419 3065 ntBASIC18.64■□□□□ 0.57
Col18a1P39061 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col18a1P39061 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Col18a1P39061 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col18a1P39061 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Col18a1P39061 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col18a1P39061 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Col18a1P39061 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC18.63■□□□□ 0.57
Col18a1P39061 Mospd4-201ENSMUST00000180618 576 ntBASIC18.63■□□□□ 0.57
Col18a1P39061 Mir7032-201ENSMUST00000185154 79 ntBASIC18.63■□□□□ 0.57
Col18a1P39061 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC18.63■□□□□ 0.57
Col18a1P39061 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC18.63■□□□□ 0.57
Col18a1P39061 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col18a1P39061 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col18a1P39061 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col18a1P39061 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms