Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm11355-201ENSMUST00000121120 306 ntBASIC11.77□□□□□ -0.53
Sdc1P18828 Gm11860-201ENSMUST00000122346 1010 ntBASIC11.77□□□□□ -0.53
Sdc1P18828 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC11.77□□□□□ -0.53
Sdc1P18828 AC122024.2-201ENSMUST00000220086 871 ntBASIC11.77□□□□□ -0.53
Sdc1P18828 AC154595.3-201ENSMUST00000224579 384 ntBASIC11.77□□□□□ -0.53
Sdc1P18828 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Sdc1P18828 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Sdc1P18828 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.77□□□□□ -0.53
Sdc1P18828 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC11.77□□□□□ -0.53
Sdc1P18828 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Sdc1P18828 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Sdc1P18828 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Sdc1P18828 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Sdc1P18828 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Sdc1P18828 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm38355-201ENSMUST00000192514 1570 ntBASIC11.76□□□□□ -0.53
Sdc1P18828 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm8584-201ENSMUST00000171982 758 ntBASIC11.76□□□□□ -0.53
Sdc1P18828 Mir5130-201ENSMUST00000175160 84 ntBASIC11.76□□□□□ -0.53
Sdc1P18828 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm18622-201ENSMUST00000219361 595 ntBASIC11.76□□□□□ -0.53
Sdc1P18828 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Sdc1P18828 Vti1a-206ENSMUST00000225529 1244 ntBASIC11.76□□□□□ -0.53
Sdc1P18828 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC11.76□□□□□ -0.53
Sdc1P18828 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Sdc1P18828 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sdc1P18828 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Sdc1P18828 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
Sdc1P18828 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Sdc1P18828 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Sdc1P18828 Trav13-3-201ENSMUST00000117226 336 ntBASIC11.75□□□□□ -0.53
Sdc1P18828 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC11.75□□□□□ -0.53
Sdc1P18828 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC11.75□□□□□ -0.53
Sdc1P18828 AC164567.1-201ENSMUST00000219185 960 ntBASIC11.75□□□□□ -0.53
Sdc1P18828 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Sdc1P18828 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sdc1P18828 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms