Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC11.64□□□□□ -0.55
Cdx1P18111 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Ntrk2-204ENSMUST00000224259 3049 ntBASIC11.64□□□□□ -0.55
Cdx1P18111 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Cdx1P18111 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Cdx1P18111 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC11.63□□□□□ -0.55
Cdx1P18111 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Gm7230-201ENSMUST00000173026 815 ntBASIC11.63□□□□□ -0.55
Cdx1P18111 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC11.63□□□□□ -0.55
Cdx1P18111 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC11.63□□□□□ -0.55
Cdx1P18111 Gm18041-201ENSMUST00000218210 618 ntBASIC11.63□□□□□ -0.55
Cdx1P18111 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Cdx1P18111 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Cdx1P18111 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Cdx1P18111 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Cdx1P18111 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Cdx1P18111 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdx1P18111 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Cdx1P18111 Gm25990-201ENSMUST00000102440 86 ntBASIC11.62□□□□□ -0.55
Cdx1P18111 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
Cdx1P18111 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdx1P18111 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC11.62□□□□□ -0.55
Cdx1P18111 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Cdx1P18111 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Gm2213-201ENSMUST00000197485 688 ntBASIC11.62□□□□□ -0.55
Cdx1P18111 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdx1P18111 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC11.62□□□□□ -0.55
Cdx1P18111 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Gm44981-201ENSMUST00000205549 1943 ntBASIC11.62□□□□□ -0.55
Cdx1P18111 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Cdx1P18111 Mmp14-206ENSMUST00000225641 3238 ntBASIC11.62□□□□□ -0.55
Cdx1P18111 Slc35b2-202ENSMUST00000223987 1766 ntBASIC11.62□□□□□ -0.55
Cdx1P18111 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Cdx1P18111 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC11.61□□□□□ -0.55
Cdx1P18111 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC11.61□□□□□ -0.55
Cdx1P18111 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms