Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Mxra8os-201ENSMUST00000097740 687 ntBASIC11.91□□□□□ -0.5
Hmgb3O54879 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Hmgb3O54879 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Hmgb3O54879 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Olfr1490-202ENSMUST00000213900 5165 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Cep250-201ENSMUST00000039994 7979 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC11.9□□□□□ -0.5
Hmgb3O54879 Dopey2-207ENSMUST00000227156 7340 ntBASIC11.9□□□□□ -0.5
Hmgb3O54879 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Gm6433-201ENSMUST00000118634 875 ntBASIC11.9□□□□□ -0.5
Hmgb3O54879 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Gm17808-201ENSMUST00000200859 894 ntBASIC11.9□□□□□ -0.5
Hmgb3O54879 Gm7506-201ENSMUST00000207758 815 ntBASIC11.9□□□□□ -0.5
Hmgb3O54879 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Hmgb3O54879 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Hmgb3O54879 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
Hmgb3O54879 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Hmgb3O54879 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.51
Hmgb3O54879 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Hmgb3O54879 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Hmgb3O54879 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Hmgb3O54879 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Hmgb3O54879 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Gm4459-201ENSMUST00000118750 468 ntBASIC11.89□□□□□ -0.51
Hmgb3O54879 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Rprl3-201ENSMUST00000157400 290 ntBASIC11.89□□□□□ -0.51
Hmgb3O54879 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC11.89□□□□□ -0.51
Hmgb3O54879 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Hmgb3O54879 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 134.4 ms