Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.06■□□□□ 0.32
Ube3bQ9ES34 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Gm7730-201ENSMUST00000212486 454 ntBASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ube3bQ9ES34 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Gm16215-201ENSMUST00000161990 637 ntBASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 CT025535.1-201ENSMUST00000227172 491 ntBASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ube3bQ9ES34 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Gm6159-201ENSMUST00000191249 1724 ntBASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Gm15393-201ENSMUST00000120499 219 ntBASIC17.04■□□□□ 0.32
Ube3bQ9ES34 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC17.04■□□□□ 0.32
Ube3bQ9ES34 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Gm2423-201ENSMUST00000074863 733 ntBASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ube3bQ9ES34 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Gm5866-201ENSMUST00000177881 973 ntBASIC17.03■□□□□ 0.32
Ube3bQ9ES34 AC124732.1-201ENSMUST00000221551 910 ntBASIC17.03■□□□□ 0.32
Ube3bQ9ES34 AC139350.3-201ENSMUST00000226151 420 ntBASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ube3bQ9ES34 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms