Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Gm5177-201ENSMUST00000183092 997 ntBASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdk5rap3Q99LM2 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdk5rap3Q99LM2 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Gm37230-201ENSMUST00000194491 818 ntBASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Gm45098-201ENSMUST00000207179 657 ntBASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdk5rap3Q99LM2 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms