Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC20.23■□□□□ 0.83
Usp47Q8BY87 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp47Q8BY87 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Gm45195-201ENSMUST00000205597 1008 ntBASIC20.22■□□□□ 0.83
Usp47Q8BY87 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp47Q8BY87 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Gm21470-201ENSMUST00000187680 696 ntBASIC20.21■□□□□ 0.83
Usp47Q8BY87 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Gm10766-202ENSMUST00000194123 606 ntBASIC20.21■□□□□ 0.83
Usp47Q8BY87 Gm18027-201ENSMUST00000218947 619 ntBASIC20.21■□□□□ 0.83
Usp47Q8BY87 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Usp47Q8BY87 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC20.2■□□□□ 0.82
Usp47Q8BY87 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Gm42612-201ENSMUST00000197986 623 ntBASIC20.2■□□□□ 0.82
Usp47Q8BY87 Gm43170-201ENSMUST00000199827 612 ntBASIC20.2■□□□□ 0.82
Usp47Q8BY87 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 AC154846.1-201ENSMUST00000226278 862 ntBASIC20.2■□□□□ 0.82
Usp47Q8BY87 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp47Q8BY87 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Usp47Q8BY87 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC20.18■□□□□ 0.82
Usp47Q8BY87 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp47Q8BY87 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms