Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm12341-201ENSMUST00000119724 503 ntBASIC18.57■□□□□ 0.56
Trim28Q62318 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Mir6392-201ENSMUST00000184924 108 ntBASIC18.57■□□□□ 0.56
Trim28Q62318 AC154687.2-201ENSMUST00000223853 640 ntBASIC18.57■□□□□ 0.56
Trim28Q62318 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Mir497b-201ENSMUST00000093601 125 ntBASIC18.57■□□□□ 0.56
Trim28Q62318 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trim28Q62318 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trim28Q62318 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trim28Q62318 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Gm13385-201ENSMUST00000121089 220 ntBASIC18.56■□□□□ 0.56
Trim28Q62318 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim28Q62318 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC18.56■□□□□ 0.56
Trim28Q62318 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim28Q62318 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Gm7558-201ENSMUST00000193221 1165 ntBASIC18.56■□□□□ 0.56
Trim28Q62318 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim28Q62318 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim28Q62318 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim28Q62318 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim28Q62318 Mir7654-201ENSMUST00000185082 70 ntBASIC18.55■□□□□ 0.56
Trim28Q62318 Ighv1-51-201ENSMUST00000192903 354 ntBASIC18.55■□□□□ 0.56
Trim28Q62318 Gm18905-201ENSMUST00000205454 928 ntBASIC18.55■□□□□ 0.56
Trim28Q62318 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Gm45384-201ENSMUST00000210451 277 ntBASIC18.55■□□□□ 0.56
Trim28Q62318 AC162801.1-201ENSMUST00000220612 198 ntBASIC18.55■□□□□ 0.56
Trim28Q62318 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim28Q62318 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim28Q62318 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim28Q62318 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim28Q62318 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim28Q62318 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim28Q62318 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Trim28Q62318 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Gm38037-201ENSMUST00000192600 1624 ntBASIC18.54■□□□□ 0.56
Trim28Q62318 Gm9347-201ENSMUST00000211473 1607 ntBASIC18.54■□□□□ 0.56
Trim28Q62318 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Gm12091-201ENSMUST00000146791 830 ntBASIC18.54■□□□□ 0.56
Trim28Q62318 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim28Q62318 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim28Q62318 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 AC159006.1-201ENSMUST00000226396 258 ntBASIC18.54■□□□□ 0.56
Trim28Q62318 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC18.54■□□□□ 0.56
Trim28Q62318 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim28Q62318 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Gm10605-202ENSMUST00000183019 3198 ntBASIC18.54■□□□□ 0.56
Trim28Q62318 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim28Q62318 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC18.53■□□□□ 0.56
Trim28Q62318 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim28Q62318 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms