Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Upf3bQ3ULL6 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3bQ3ULL6 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gm4081-201ENSMUST00000195287 1838 ntBASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gm13015-201ENSMUST00000118674 204 ntBASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gm6539-201ENSMUST00000119157 1064 ntBASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3bQ3ULL6 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Mir449b-201ENSMUST00000104833 80 ntBASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Gm10275-202ENSMUST00000168697 495 ntBASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Gm10253-201ENSMUST00000194270 940 ntBASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Gm10275-201ENSMUST00000092620 635 ntBASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3bQ3ULL6 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3bQ3ULL6 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms