Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC12.27□□□□□ -0.45
Col8a1Q00780 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Mir3102-201ENSMUST00000175555 104 ntBASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm27701-201ENSMUST00000184498 110 ntBASIC12.26□□□□□ -0.45
Col8a1Q00780 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Col8a1Q00780 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm19220-201ENSMUST00000222682 803 ntBASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm29340-201ENSMUST00000188763 3854 ntBASIC12.26□□□□□ -0.45
Col8a1Q00780 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.26□□□□□ -0.45
Col8a1Q00780 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
Col8a1Q00780 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col8a1Q00780 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm15198-201ENSMUST00000117283 177 ntBASIC12.25□□□□□ -0.45
Col8a1Q00780 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm18827-201ENSMUST00000188341 790 ntBASIC12.25□□□□□ -0.45
Col8a1Q00780 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm9257-201ENSMUST00000221254 232 ntBASIC12.25□□□□□ -0.45
Col8a1Q00780 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm10478-201ENSMUST00000084451 396 ntBASIC12.25□□□□□ -0.45
Col8a1Q00780 Ccdc166-201ENSMUST00000182172 2584 ntBASIC12.25□□□□□ -0.45
Col8a1Q00780 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC12.25□□□□□ -0.45
Col8a1Q00780 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms