Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Gm14451-201ENSMUST00000121581 1542 ntBASIC13.17□□□□□ -0.3
Scn1bP97952 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Scn1bP97952 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.17□□□□□ -0.3
Scn1bP97952 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Scn1bP97952 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Scn1bP97952 Gm5639-201ENSMUST00000122305 2403 ntBASIC13.17□□□□□ -0.3
Scn1bP97952 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.16□□□□□ -0.3
Scn1bP97952 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Scn1bP97952 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.16□□□□□ -0.3
Scn1bP97952 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC13.16□□□□□ -0.3
Scn1bP97952 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Scn1bP97952 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Scn1bP97952 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Scn1bP97952 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Scn1bP97952 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC13.15□□□□□ -0.3
Scn1bP97952 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Gm14859-201ENSMUST00000117752 357 ntBASIC13.15□□□□□ -0.3
Scn1bP97952 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.15□□□□□ -0.3
Scn1bP97952 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Scn1bP97952 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC13.15□□□□□ -0.3
Scn1bP97952 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Otx2os1-206ENSMUST00000228153 787 ntBASIC13.15□□□□□ -0.3
Scn1bP97952 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Scn1bP97952 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Scn1bP97952 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Scn1bP97952 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Scn1bP97952 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms