Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 BC001981-202ENSMUST00000191393 1545 ntBASIC15.22■□□□□ 0.03
Shmt1P50431 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Shmt1P50431 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC15.21■□□□□ 0.03
Shmt1P50431 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Gm9063-201ENSMUST00000223299 582 ntBASIC15.21■□□□□ 0.03
Shmt1P50431 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC15.21■□□□□ 0.03
Shmt1P50431 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Shmt1P50431 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.21■□□□□ 0.03
Shmt1P50431 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Shmt1P50431 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Shmt1P50431 Gm11960-202ENSMUST00000181063 2858 ntBASIC15.21■□□□□ 0.02
Shmt1P50431 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Shmt1P50431 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Shmt1P50431 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Shmt1P50431 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Shmt1P50431 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Shmt1P50431 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Shmt1P50431 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Shmt1P50431 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Shmt1P50431 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Shmt1P50431 Gm27680-201ENSMUST00000184192 160 ntBASIC15.2■□□□□ 0.02
Shmt1P50431 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.2■□□□□ 0.02
Shmt1P50431 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Gm44344-201ENSMUST00000200287 129 ntBASIC15.2■□□□□ 0.02
Shmt1P50431 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.2■□□□□ 0.02
Shmt1P50431 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC15.2■□□□□ 0.02
Shmt1P50431 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.2■□□□□ 0.02
Shmt1P50431 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Shmt1P50431 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.19■□□□□ 0.02
Shmt1P50431 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Gm43697-201ENSMUST00000199637 2581 ntBASIC15.19■□□□□ 0.02
Shmt1P50431 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Shmt1P50431 Gm27989-201ENSMUST00000184721 107 ntBASIC15.19■□□□□ 0.02
Shmt1P50431 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.19■□□□□ 0.02
Shmt1P50431 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms