Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Rfx1P48377 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Ank2-226ENSMUST00000189368 339 ntBASIC17.22■□□□□ 0.35
Rfx1P48377 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.22■□□□□ 0.35
Rfx1P48377 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC17.22■□□□□ 0.35
Rfx1P48377 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Rfx1P48377 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
Rfx1P48377 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.21■□□□□ 0.35
Rfx1P48377 Gm28033-201ENSMUST00000184224 96 ntBASIC17.21■□□□□ 0.35
Rfx1P48377 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Gm43347-201ENSMUST00000200226 580 ntBASIC17.21■□□□□ 0.35
Rfx1P48377 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.21■□□□□ 0.35
Rfx1P48377 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx1P48377 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Rfx1P48377 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC17.21■□□□□ 0.34
Rfx1P48377 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Rfx1P48377 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Rfx1P48377 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC17.2■□□□□ 0.34
Rfx1P48377 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC17.2■□□□□ 0.34
Rfx1P48377 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Gm34391-201ENSMUST00000203706 907 ntBASIC17.2■□□□□ 0.34
Rfx1P48377 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Rfx1P48377 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Gm2420-202ENSMUST00000202224 2249 ntBASIC17.2■□□□□ 0.34
Rfx1P48377 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Rfx1P48377 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx1P48377 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rfx1P48377 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Rfx1P48377 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Gm42928-201ENSMUST00000197338 3339 ntBASIC17.19■□□□□ 0.34
Rfx1P48377 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Rfx1P48377 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rfx1P48377 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rfx1P48377 Gm6376-201ENSMUST00000209407 580 ntBASIC17.19■□□□□ 0.34
Rfx1P48377 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC17.19■□□□□ 0.34
Rfx1P48377 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx1P48377 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms