Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Gm38102-201ENSMUST00000192791 1935 ntBASIC11.8□□□□□ -0.52
Sdc1P18828 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 AC117194.1-201ENSMUST00000224847 3002 ntBASIC11.8□□□□□ -0.52
Sdc1P18828 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Sdc1P18828 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Sdc1P18828 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Sdc1P18828 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Sdc1P18828 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC11.8□□□□□ -0.52
Sdc1P18828 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC11.8□□□□□ -0.52
Sdc1P18828 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Sdc1P18828 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Sdc1P18828 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Gm42748-201ENSMUST00000199354 2341 ntBASIC11.8□□□□□ -0.52
Sdc1P18828 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sdc1P18828 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
Sdc1P18828 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Sdc1P18828 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Gm25925-201ENSMUST00000158314 306 ntBASIC11.79□□□□□ -0.52
Sdc1P18828 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Gm27389-201ENSMUST00000183622 195 ntBASIC11.79□□□□□ -0.52
Sdc1P18828 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 Gm42829-201ENSMUST00000198417 2585 ntBASIC11.79□□□□□ -0.52
Sdc1P18828 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC11.79□□□□□ -0.52
Sdc1P18828 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Sdc1P18828 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Sdc1P18828 Mypopos-202ENSMUST00000205975 2321 ntBASIC11.78□□□□□ -0.52
Sdc1P18828 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Gm10499-201ENSMUST00000174094 934 ntBASIC11.78□□□□□ -0.52
Sdc1P18828 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC11.78□□□□□ -0.52
Sdc1P18828 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Rubie-203ENSMUST00000227803 2430 ntBASIC11.78□□□□□ -0.52
Sdc1P18828 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC11.78□□□□□ -0.52
Sdc1P18828 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sdc1P18828 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sdc1P18828 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Sdc1P18828 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sdc1P18828 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sdc1P18828 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sdc1P18828 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms