Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Gm5779-201ENSMUST00000218467 910 ntBASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 AC125206.2-201ENSMUST00000217454 574 ntBASIC16.18■□□□□ 0.18
Ushbp1Q8R370 AC155729.1-201ENSMUST00000227758 544 ntBASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 AC167013.2-201ENSMUST00000228520 2684 ntBASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Ushbp1Q8R370 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Gm7336-201ENSMUST00000107041 1232 ntBASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Gm11424-201ENSMUST00000121929 829 ntBASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 AC140375.2-201ENSMUST00000225283 584 ntBASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Ushbp1Q8R370 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Gm9182-201ENSMUST00000217829 639 ntBASIC16.16■□□□□ 0.18
Ushbp1Q8R370 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms