Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Gm7336-201ENSMUST00000107041 1232 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Mir6977-201ENSMUST00000184960 64 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Carlr-201ENSMUST00000181515 2574 ntBASIC16.79■□□□□ 0.28
Vps53Q8CCB4 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps53Q8CCB4 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Gm12428-201ENSMUST00000119844 727 ntBASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps53Q8CCB4 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Vps53Q8CCB4 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps53Q8CCB4 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps53Q8CCB4 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Vps53Q8CCB4 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps53Q8CCB4 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms