Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Rprl2-201ENSMUST00000157150 290 ntBASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Gm44335-201ENSMUST00000196879 141 ntBASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Gm44297-201ENSMUST00000198304 141 ntBASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Gm44346-201ENSMUST00000198851 141 ntBASIC12.84□□□□□ -0.35
Ube3dQ8BX13 CT010506.4-201ENSMUST00000225457 351 ntBASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Ube3dQ8BX13 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ube3dQ8BX13 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ube3dQ8BX13 Carlr-201ENSMUST00000181515 2574 ntBASIC12.83□□□□□ -0.35
Ube3dQ8BX13 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ube3dQ8BX13 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Ube3dQ8BX13 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Gm5628-201ENSMUST00000222318 1049 ntBASIC12.83□□□□□ -0.36
Ube3dQ8BX13 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Mxra8os-201ENSMUST00000097740 687 ntBASIC12.83□□□□□ -0.36
Ube3dQ8BX13 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 AC126250.1-201ENSMUST00000228343 1768 ntBASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ube3dQ8BX13 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Gm43767-201ENSMUST00000198933 381 ntBASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 AC154621.1-201ENSMUST00000226155 1119 ntBASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Gm44645-201ENSMUST00000205492 1653 ntBASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Ube3dQ8BX13 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ube3dQ8BX13 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ube3dQ8BX13 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ube3dQ8BX13 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ube3dQ8BX13 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC12.81□□□□□ -0.36
Ube3dQ8BX13 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms