Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 AC122901.1-201ENSMUST00000214203 1790 ntBASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trim40Q3UWA4 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trim40Q3UWA4 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trim40Q3UWA4 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trim40Q3UWA4 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms