Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3aQ3ULJ3 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Gm12341-201ENSMUST00000119724 503 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Gm9002-201ENSMUST00000178437 499 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Mir7085-201ENSMUST00000184353 66 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Gm21470-201ENSMUST00000187680 696 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Gm44719-201ENSMUST00000206404 149 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 AC133083.1-201ENSMUST00000221736 2209 ntBASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3aQ3ULJ3 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm12960-201ENSMUST00000120017 1066 ntBASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm17150-201ENSMUST00000165577 381 ntBASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm27701-201ENSMUST00000184498 110 ntBASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm5279-201ENSMUST00000199575 745 ntBASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Gm45212-201ENSMUST00000205831 3403 ntBASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3aQ3ULJ3 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3aQ3ULJ3 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms