Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxc4Q08624 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC13.81□□□□□ -0.2
Hoxc4Q08624 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 AC154846.1-201ENSMUST00000226278 862 ntBASIC13.81□□□□□ -0.2
Hoxc4Q08624 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.81□□□□□ -0.2
Hoxc4Q08624 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxc4Q08624 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gm44645-201ENSMUST00000205492 1653 ntBASIC13.8□□□□□ -0.2
Hoxc4Q08624 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 AL593843.1-201ENSMUST00000195891 145 ntBASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.8□□□□□ -0.2
Hoxc4Q08624 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gm11960-202ENSMUST00000181063 2858 ntBASIC13.8□□□□□ -0.2
Hoxc4Q08624 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.8□□□□□ -0.2
Hoxc4Q08624 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.8□□□□□ -0.2
Hoxc4Q08624 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxc4Q08624 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC13.79□□□□□ -0.2
Hoxc4Q08624 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Gm28760-201ENSMUST00000185995 736 ntBASIC13.79□□□□□ -0.2
Hoxc4Q08624 Gm31326-201ENSMUST00000191856 1048 ntBASIC13.79□□□□□ -0.2
Hoxc4Q08624 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.79□□□□□ -0.2
Hoxc4Q08624 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms