Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Mir125a-201ENSMUST00000083545 68 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.45□□□□□ -0.42
Nkx3-1P97436 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Nkx3-1P97436 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Gm14042-201ENSMUST00000120139 833 ntBASIC12.44□□□□□ -0.42
Nkx3-1P97436 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Gm30437-201ENSMUST00000206086 1201 ntBASIC12.44□□□□□ -0.42
Nkx3-1P97436 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Nkx3-1P97436 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Gm8515-201ENSMUST00000194852 576 ntBASIC12.43□□□□□ -0.42
Nkx3-1P97436 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.43□□□□□ -0.42
Nkx3-1P97436 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 AC154412.1-201ENSMUST00000226540 2786 ntBASIC12.43□□□□□ -0.42
Nkx3-1P97436 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Nkx3-1P97436 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms