Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC17.26■□□□□ 0.35
Rfx1P48377 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Rfx1P48377 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Rfx1P48377 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Rfx1P48377 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Rfx1P48377 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.25■□□□□ 0.35
Rfx1P48377 Gm13464-201ENSMUST00000119418 935 ntBASIC17.25■□□□□ 0.35
Rfx1P48377 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.25■□□□□ 0.35
Rfx1P48377 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC17.25■□□□□ 0.35
Rfx1P48377 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.25■□□□□ 0.35
Rfx1P48377 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Rfx1P48377 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rfx1P48377 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Rfx1P48377 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 AC119177.1-201ENSMUST00000227647 1332 ntBASIC17.24■□□□□ 0.35
Rfx1P48377 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.24■□□□□ 0.35
Rfx1P48377 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.24■□□□□ 0.35
Rfx1P48377 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rfx1P48377 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Rfx1P48377 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Rfx1P48377 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC17.23■□□□□ 0.35
Rfx1P48377 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.23■□□□□ 0.35
Rfx1P48377 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Gm7222-201ENSMUST00000117512 906 ntBASIC17.23■□□□□ 0.35
Rfx1P48377 Gm15173-201ENSMUST00000122049 433 ntBASIC17.23■□□□□ 0.35
Rfx1P48377 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
Rfx1P48377 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Rfx1P48377 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.23■□□□□ 0.35
Rfx1P48377 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Rfx1P48377 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rfx1P48377 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC17.22■□□□□ 0.35
Rfx1P48377 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx1P48377 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms