Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC13.71□□□□□ -0.21
Msx1P13297 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Msx1P13297 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx1P13297 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Msx1P13297 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC13.7□□□□□ -0.22
Msx1P13297 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Gm13899-201ENSMUST00000121519 1255 ntBASIC13.7□□□□□ -0.22
Msx1P13297 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Msx1P13297 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Msx1P13297 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Gm16833-202ENSMUST00000189204 672 ntTSL 2 BASIC13.7□□□□□ -0.22
Msx1P13297 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Msx1P13297 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Msx1P13297 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Msx1P13297 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx1P13297 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Msx1P13297 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msx1P13297 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Msx1P13297 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC13.69□□□□□ -0.22
Msx1P13297 Gm20815-201ENSMUST00000115496 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.69□□□□□ -0.22
Msx1P13297 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.69□□□□□ -0.22
Msx1P13297 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msx1P13297 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Gm21812-202ENSMUST00000188908 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Gm45925-201ENSMUST00000218882 744 ntBASIC13.69□□□□□ -0.22
Msx1P13297 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msx1P13297 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.69□□□□□ -0.22
Msx1P13297 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx1P13297 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC13.68□□□□□ -0.22
Msx1P13297 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Msx1P13297 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Msx1P13297 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Msx1P13297 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Syt7-205ENSMUST00000224135 1557 ntBASIC13.68□□□□□ -0.22
Msx1P13297 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msx1P13297 Gm12439-201ENSMUST00000117162 365 ntBASIC13.68□□□□□ -0.22
Msx1P13297 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.68□□□□□ -0.22
Msx1P13297 Gm14767-201ENSMUST00000121559 586 ntBASIC13.68□□□□□ -0.22
Msx1P13297 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC13.68□□□□□ -0.22
Msx1P13297 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC13.68□□□□□ -0.22
Msx1P13297 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Msx1P13297 Gm18049-201ENSMUST00000208909 581 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms