Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.83□□□□□ -0.36
Col5a1O88207 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.83□□□□□ -0.36
Col5a1O88207 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.83□□□□□ -0.36
Col5a1O88207 Gm8652-201ENSMUST00000181363 964 ntBASIC12.83□□□□□ -0.36
Col5a1O88207 Gm27486-201ENSMUST00000184923 80 ntBASIC12.83□□□□□ -0.36
Col5a1O88207 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Col5a1O88207 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Col5a1O88207 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.83□□□□□ -0.36
Col5a1O88207 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.83□□□□□ -0.36
Col5a1O88207 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC12.83□□□□□ -0.36
Col5a1O88207 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col5a1O88207 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Col5a1O88207 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col5a1O88207 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.82□□□□□ -0.36
Col5a1O88207 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col5a1O88207 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.82□□□□□ -0.36
Col5a1O88207 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col5a1O88207 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.82□□□□□ -0.36
Col5a1O88207 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12.82□□□□□ -0.36
Col5a1O88207 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.82□□□□□ -0.36
Col5a1O88207 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.82□□□□□ -0.36
Col5a1O88207 Gm7584-201ENSMUST00000175829 940 ntBASIC12.82□□□□□ -0.36
Col5a1O88207 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col5a1O88207 Gm24526-201ENSMUST00000082921 158 ntBASIC12.82□□□□□ -0.36
Col5a1O88207 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col5a1O88207 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col5a1O88207 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Gm16425-201ENSMUST00000118143 3130 ntBASIC12.82□□□□□ -0.36
Col5a1O88207 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col5a1O88207 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.81□□□□□ -0.36
Col5a1O88207 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Mir7070-201ENSMUST00000183657 86 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 Gm21470-201ENSMUST00000187680 696 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 AC126253.1-201ENSMUST00000227974 824 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 Gm6091-201ENSMUST00000098307 165 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col5a1O88207 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 Gm26464-201ENSMUST00000157094 305 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Col5a1O88207 Gm29199-201ENSMUST00000187766 775 ntBASIC12.81□□□□□ -0.36
Col5a1O88207 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.81□□□□□ -0.36
Col5a1O88207 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC12.81□□□□□ -0.36
Col5a1O88207 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms