Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Gm18195-201ENSMUST00000207604 706 ntBASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Gm45167-201ENSMUST00000208007 322 ntBASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Gm7787-201ENSMUST00000216858 688 ntBASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Lima1Q9ERG0 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lima1Q9ERG0 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Gm13036-201ENSMUST00000117799 748 ntBASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
Lima1Q9ERG0 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lima1Q9ERG0 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms