Protein–RNA interactions for Protein: Q9D7F7

Chmp4c, Charged multivesicular body protein 4c, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp4cQ9D7F7 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Chmp4cQ9D7F7 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Gm16198-201ENSMUST00000118766 670 ntBASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Chmp4cQ9D7F7 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Gm17968-201ENSMUST00000194902 784 ntBASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Gm45760-201ENSMUST00000212190 1782 ntBASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Chmp4cQ9D7F7 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Chmp4cQ9D7F7 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms