Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
Vps28Q9D1C8 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 AC158529.1-201ENSMUST00000223618 239 ntBASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vps28Q9D1C8 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Olfr286-202ENSMUST00000205305 969 ntBASIC14.81□□□□□ -0.04
Vps28Q9D1C8 AC154621.1-201ENSMUST00000226155 1119 ntBASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Gm42466-201ENSMUST00000202099 1301 ntBASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vps28Q9D1C8 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.8□□□□□ -0.04
Vps28Q9D1C8 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Gm6415-201ENSMUST00000118488 348 ntBASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Gm13015-201ENSMUST00000118674 204 ntBASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vps28Q9D1C8 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps28Q9D1C8 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms