Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gm12008-201ENSMUST00000117791 755 ntBASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gm18889-201ENSMUST00000174284 929 ntBASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Smc1aQ9CU62 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Gm43474-201ENSMUST00000196415 774 ntBASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Smc1aQ9CU62 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm9856-201ENSMUST00000217077 2578 ntBASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm25948-201ENSMUST00000175334 112 ntBASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm43125-201ENSMUST00000201724 730 ntBASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Smc1aQ9CU62 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms