Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Gm12134-201ENSMUST00000122109 520 ntBASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Arhgef33-209ENSMUST00000225223 714 ntBASIC16.82■□□□□ 0.28
Vps53Q8CCB4 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Vps53Q8CCB4 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gm25287-201ENSMUST00000103846 110 ntBASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gm22918-201ENSMUST00000103855 110 ntBASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.81■□□□□ 0.28
Vps53Q8CCB4 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps53Q8CCB4 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.8■□□□□ 0.28
Vps53Q8CCB4 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Gm10154-201ENSMUST00000084445 354 ntBASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Vps53Q8CCB4 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms